PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004489395.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ZF-HD
Protein Properties Length: 322aa    MW: 34785.5 Da    PI: 7.4484
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004489395.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.51.4e-3280137359
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                      v+YkeClkNh a+lGgha+DGC+Efmps++++  +++++kCaACgCHRnFHRre+ee
  XP_004489395.1  80 VVTYKECLKNHVATLGGHALDGCCEFMPSPTATsDDPTSIKCAACGCHRNFHRREPEE 137
                     689***************************999788******************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047707.6E-2781135IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2181134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.2E-2882134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.76683134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.09E-19203273IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-30206273IPR009057Homeodomain-like
TIGRFAMsTIGR015651.6E-27212269IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEVITTPTTN TNTNTNITSL TSSKSPEPES ENPTRIQQLP TNTTTSNITK PITFSNGVLK  60
RLNPNTNNHH NNHHAQPPMV VTYKECLKNH VATLGGHALD GCCEFMPSPT ATSDDPTSIK  120
CAACGCHRNF HRREPEEPIS TVFEYQPHHR HHPPPPLFQS RSPSSPSPPP ISSYPSAPHM  180
LLALSGAGVG LSIPPENTAA PVNLSSPMGT NRKRFRTKFT QEQKEKMHEF AESVGWKMQK  240
RDEETVNGFC NEVGVDRSVL KVWMHNNKNT LGRKLSDHAG DGAGAAVDGV SGGGCAVNEN  300
DENHNNGTNV AASTTNGSSS SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-222132701875ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1396000.0AC139600.16 Medicago truncatula chromosome 6 clone mth2-20m4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004489395.10.0PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LXG01e-70ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLG7KKI21e-134G7KKI2_MEDTR; Transcription factor HB29-like protein
STRINGGLYMA13G05420.11e-90(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.19e-57homeobox protein 34